Index

A

add_classification() (mmochi.hierarchy.Hierarchy method)

add_subset() (mmochi.hierarchy.Hierarchy method)

B

batch_iterator() (in module mmochi.utils)

batchless_thresholds() (mmochi.hierarchy.Hierarchy method)

C

check_all_markers() (mmochi.hierarchy.Hierarchy method) Classification (class in mmochi.hierarchy) classification_markers() (mmochi.hierarchy.Hierarchy method) classification_parents() (mmochi.hierarchy.Hierarchy method)

classifier_setup() (in module mmochi.classifier) classify() (in module mmochi.classifier) color_dict() (mmochi.hierarchy.Hierarchy method) convert_10x() (in module mmochi.utils) copy() (mmochi.hierarchy.Hierarchy method)

D

density_plot() (in module mmochi.landmarking) density_plot_total() (in module mmochi.landmarking)

display() (mmochi.hierarchy.Hierarchy method) drop_threshold() (mmochi.hierarchy.Hierarchy method)

F

feature_importances() (in module mmochi.plotting)

flatten_children() (mmochi.hierarchy.Hierarchy method)

G

generate_exclusive_features() (in module mmochi.utils) get_all_markers() (mmochi.hierarchy.Hierarchy method) get_classifications() (mmochi.hierarchy.Hierarchy method)

get_clf() (mmochi.hierarchy.Hierarchy method) get_data() (in module mmochi.utils) get_info() (mmochi.hierarchy.Hierarchy method) get_threshold_info() (mmochi.hierarchy.Hierarchy method)

H

has_clf() (mmochi.hierarchy.Hierarchy method) hc_defs() (in module mmochi.hierarchy)

hc_threshold() (in module mmochi.classifier) Hierarchy (class in mmochi.hierarchy)

I

identify_group_markers() (in module mmochi.classifier)

intersect_features() (in module mmochi.utils)

L

landmark_register_adts() (in module mmochi.landmarking) load_peak_overrides() (in module mmochi.landmarking)

load_thresholds() (mmochi.hierarchy.Hierarchy method) log_to_file() (in module mmochi.logger)

M

marker() (in module mmochi.utils) mmochi.classifier module mmochi.hierarchy module mmochi.landmarking module mmochi.logger module mmochi.plotting module

mmochi.thresholding module mmochi.utils module module mmochi.classifier mmochi.hierarchy mmochi.landmarking mmochi.logger mmochi.plotting mmochi.thresholding mmochi.utils

O

obsm_to_X() (in module mmochi.utils)

P

plot_confidence() (in module mmochi.plotting) plot_confusion() (in module mmochi.plotting)

plot_important_features() (in module mmochi.plotting) plot_tree() (in module mmochi.plotting) preprocess_adatas() (in module mmochi.utils)

R

reset_thresholds() (mmochi.hierarchy.Hierarchy method)

run_all_thresholds() (mmochi.hierarchy.Hierarchy method) run_threshold() (in module mmochi.thresholding)

S

save() (mmochi.hierarchy.Hierarchy method) save_peak_overrides() (in module mmochi.landmarking) save_thresholds() (mmochi.hierarchy.Hierarchy method) set_clf() (mmochi.hierarchy.Hierarchy method)

set_threshold() (mmochi.hierarchy.Hierarchy method) stacked_density_plots() (in module mmochi.landmarking) Subset (class in mmochi.hierarchy) subsets_info() (mmochi.hierarchy.Hierarchy method)

T

terminal_names() (in module mmochi.classifier)

threshold() (in module mmochi.thresholding) to_graphviz() (mmochi.hierarchy.Hierarchy method)

U

umap_interrogate_level() (in module mmochi.utils) umap_thresh() (in module mmochi.utils)

update_landmark_register() (in module mmochi.landmarking) update_peak_overrides() (in module mmochi.landmarking)