MMoCHi - MultiModal Classification Hierarchy

MMoCHi is a hierarchical classification system designed for CITE-Seq data, but applicable to diverse single-cell sequencing modalities. It includes tools for:

1. Integrating data of Antibody Derived Tag (ADT) expression
2. High-confidence thresholding of cell populations using ADT expression, gene expression, and cell metadata
3. Building a hierarchy of cell subset classifiers
4. Training and evaluating random forest classifiers at each hierarchy level

• To get started with MMoCHi, see Installation, Tutorials, and Example Hierarchies.
• For more details on formatting your data correctly, read the Input and Output Specifications.
• For complete documentation, check out our API.
• Check out our Github!